Scaffold Ga0209194_1019555

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1019555
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2349
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F016409	Metagenome	247	Y
F046317	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_10195552	F012123	AGGA	MIKRNPCRVKKVTYDQDGMKIVEQRGYAQERKTIDGEESVFVMEGGDTGIGYWYPKNEVRLVHGKWRNKTSEPSRKSYWKRAK
Ga0209194_10195553	F016409	GAG	MLSANKLGYYLWKRINQDQEKLARTRPMNLYGLYINQSDLNEYIKDYFNYGVDWDDTSKEELWEKRYWDEKDNDI
Ga0209194_10195555	F046317	GGA	MNEKEQKEYFEYLINSYDDGTASIKGDHPKEVQIAVDSFFKAGKILVDHPEIEKIPTEYVDKLLSTLAQYPQYHKLVVDLMGIISSGKNE