Scaffold Ga0209194_1012810

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1012810
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3164
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010313	Metagenome / Metatranscriptome	305	Y
F015461	Metagenome / Metatranscriptome	254	Y
F025231	Metagenome / Metatranscriptome	202	Y
F061764	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_10128101	F025231	AGGAG	MEIRETHYELYLDGALYHEGTLEDCTEYAQRALDDDCAEVYKVTVTEEKVV
Ga0209194_10128102	F015461	GGAG	MENILAELKAIMQDAQEASARAGEYKNDIDRGINVNHNPEYDTSVTKQDKINSLFEYLIDAKDDMDRVKDSLKDIHDKLDDLLELVEYENIAEEIR
Ga0209194_10128103	F010313	AGGA	MTQLDQNIIKGLDDQVIARVYNRKRKATHKAATITERLAVILAKLTGLLYFGFLCFCVGYFSTLYFDGLLFEIPGLVSYWIDFGRTQ
Ga0209194_10128106	F061764	GGAG	MEWRVYVIACGNRQWYHAMASKSEALDKLTVLERRHDTRYQFEIEPVTF