Scaffold Ga0209194_1005847

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1005847
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5466
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048839	Metagenome / Metatranscriptome	147	N
F050222	Metagenome / Metatranscriptome	145	Y
F057992	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_10058475	F050222	GGAGG	MTPLITILLIHIGSNVYSVEYPSQMACGEALVAIAEATPPLGGRKTYAQCVRTYAPSQSIRPRARGDL
Ga0209194_10058476	F048839	AGGAG	MINAFNLDRTLATKHESLIGRAMQRQAKAEGHFKGAPKKAMTNMGARADGTRSLGEMALAHLQSISPTRMILTDITKAVSGSELPTSRYSVKYALQGLINRGLIQHGFYRRNLIEYWFEVEEDL
Ga0209194_10058478	F057992	AGG	MTLATITITNRLPTDTGFALRQDDGSFAQVFVPSHIMRCAGGSDGMSVGHTYDVVLIENSEALRATTPWRVIQMDVGPVGGQQLAPEKTAPAAPSSALIDDRIFEQLSASLYMTTGEITTALGASGTIVRDRLMAMFNRGEIVRADVHARPNLQRATMCLWAIDIDAFIAEGE