Scaffold Ga0209194_1005482

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1005482
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5709
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026712	Metagenome / Metatranscriptome	197	Y
F031255	Metagenome / Metatranscriptome	183	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_100548211	F026712	N/A	MYWAVNTTEQETLMDLVIREQRLRGETMDNYNVQEVAYRQAISDGAMRTDNYFNK
Ga0209194_10054823	F077286	GAG	MIKYKYTVEWEGDVTNYKQDFESLEEARIAMLFHRNRNAVIRVIKIDDYA
Ga0209194_10054824	F031255	N/A	MVKYFNDVVAELQSKGTIFGAEYRKKNGEVTKINGRFGVSKFVKGTGTSSPNVLTVWDNNRKRYTSLIPDNIVSLNTNKTKYVKSDEFLIESYD