Scaffold Ga0209194_1000541

Overview

Basic Information

• Taxon OID: 3300025632
• Scaffold ID: Ga0209194_1000541
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29754
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (65.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F004747	Metagenome / Metatranscriptome	425	Y
F009440	Metagenome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209194_10005411	F009440	AGG	MKAKDYKSITEILTKKYKKKFYLFMDLKDCMDRIKK
Ga0209194_10005412	F000993	AGG	MTKLHHTAYKKNYKKYILNCIELDCEEKELNTDQEKIKYIFERFYSEFDWNIKRIGKQKAMTEWLQGLALDIEYYYNDIVNLAVKMGSIDENPNEKLQAKVIENYWSFMANVILSFEPKQ
Ga0209194_10005413	F004747	N/A	MNNNKVNYAEVIARLLMLLVGFIIVMIGFITFIHSADHRILGILIVFGGFMSMFAALPDN