Scaffold Ga0208004_1010202

Overview

Basic Information

• Taxon OID: 3300025630
• Scaffold ID: Ga0208004_1010202
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3165
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010083	Metagenome / Metatranscriptome	308	N
F010538	Metagenome / Metatranscriptome	302	Y
F050346	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208004_10102022	F010538	N/A	MQTIFFIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEISGNPVEDVAVKALMIKKIVDATVDEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQNRPDVYEAYVKFLQARDKDAVLTRNGDGTEQEQLARSALVSYLDTLKRDQNYNTVPDNVPATYRCRFLLLETERFYGTEVDVIAIGDENGIKIQGITSQPLKDGEPIKAFRNQLQVGEWMPYDTIANANVPNKSAMALVDKAIKAKWGDGDDKRYIETIEASNEWLANNPDDFENPDTPYLR
Ga0208004_10102024	F050346	N/A	MITKPDEVPRSLGNVYSYKQGYSSWKEFIADRGEEGFKQFLKDLYDRDDLKKTRTLSSKC
Ga0208004_10102026	F010083	N/A	YNEDPYRITMPLKMIYDINTKKDCMFPSSEWKRVMEGWPLMNSGETYITCYYPDFRDAIYVLRRKKPECVENIRYEQEYTYRGSPYSMVTRDPMRKVHHVEESEGMKGPIMIQKVEAIMENGEVRMWDTARFLRYAGPRSDFHNVKDIRMRDLFDANEEVPDEWHVYMFGKKVVIDKNEELTPRTLVPGRI