Scaffold Ga0208004

Basic Information
Taxon OID	3300025630 Open in IMG/M
Scaffold ID	Ga0208004_1008587 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208004_1008587 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3488
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3488

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006017	Metagenome / Metatranscriptome	383	N
F011388	Metagenome	291	Y
F027501	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208004_10085871	F011388	AGG	LKPLDNDIARDLARGRNDIAFFAERWLGVRGNPGQIRWWEACAERDDTGYRPKYITTVVSAGNRAGKTLAMAVVCLHHALYKLGIASPDASDPQSYKRWSDTPYEWYHVGIQQETAELVFREIETLLGGSHPAQKGRGCAIIKELGKVIDTQKRYRGEYAWVKFNPVVGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLLMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYAELWEKGNLDNPARDEKFISFRLSTRDNIGYGLTQENFDDVVRQQAEYLIPQNIDGYFIEARDAFFWSQSVLALYKTLEDDVKPVRNHRYIQGVDPGISHDATWAITLDITSRNKIRGVRIRKRSGKQSISAVVNMVREGHLLYSQDGAFCTTIVDSTGLGGRLFQQEFSMIRPLRGFDFGGTKAKKVDLLND
Ga0208004_10085875	F027501	AGGAG	MYNDIKAGIRWVIDNTGVDEALIEFGRTFITVSISVALGLGIPLLDISGGDFRTIISAGLASGLQILIKFLDPKNTQFGIKEKTPEDKAAAEKQFDI
Ga0208004_10085876	F006017	N/A	SQGHYAGRNKMKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYTVDPSAGDGIKAKAKATGFVEKEGVSDNGSSLIDLIKTAKEMGAKARYAKSWDDVVLSAHRGAGLIVWVQQAVDYPPVEISEWHKKWQNYWLKKDKKHIVVGYGHMTAAGWDAVDGWQWSCPTRSGKGKEKFGVSVTEEQLKQIASSKKKLTGGAAHKHVVIVEWK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208004_1008587

Overview

Ecosystem & Geography

Associated Families

Sequences