Scaffold Ga0208004_1008030

Overview

Basic Information

• Taxon OID: 3300025630
• Scaffold ID: Ga0208004_1008030
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3631
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F005847	Metagenome	388	Y
F021100	Metagenome	220	Y
F038218	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208004_10080303	F005847	GGAG	MKPEPRGRIPQLYRDMRIGQRVVVNYEHDHAFHLLRSAWVRHYRQQMIADGYDVPWLYLEPVGGSRTLVVRMRNEAEVKAARAAFLAKGKK
Ga0208004_10080305	F002942	AGGAGG	MTDEQFTAFTIVLAAVSVPSVSLLFAMAWELWQYAKRVQP
Ga0208004_10080307	F004131	GGAG	MRLRRTTVVADVSQFPFSAMRRQQITPLMREAAELLWPAEQRRVTVLLRAPEYWDECERADLEASEELADICFDLWVGARG
Ga0208004_10080308	F021100	AGG	MNDEIRIAQAAMTIAGCIFEDCDQSTLAGKLQHCCEWRNQGTDDDLTQADRDGLRLLLDAAAGISSSLCNSTNGAAIRTPTVEEVCESVLAGPEGHILVDGVQCYVEL
Ga0208004_10080309	F038218	AGG	MNTELLNAIQSMLINFANENAISLADEFGTREKFSEFVFSFTIKSLVDICGLDTKTAYDFVMGDGAFTKLADECWQQLNAVAA