Scaffold Ga0208004_1005794

Overview

Basic Information

• Taxon OID: 3300025630
• Scaffold ID: Ga0208004_1005794
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4384
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Micromonas pusilla virus 12T (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031081	Metagenome / Metatranscriptome	183	N
F077250	Metagenome / Metatranscriptome	117	N
F078659	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208004_10057945	F077250	AGGA	MNLYFIAFLFALVFIISYKPGSGTLQKWFGIKEQMHHEMMEAPEVMAPSYKVTSRDEINARELNNIFGIQR
Ga0208004_10057946	F031081	GGA	MAKVERSSYPVKKFMIKSPKGETIYFGQAGYGDYDLWSRVDPEYAEKKRYRYTTSHKAILLKDGTPAWKSPETAEYYAMRGTWDEPRGNPLFKQVVAMRNKSLTKEEKAFIAKHKKLH
Ga0208004_10057948	F078659	N/A	MWYEPEVEYDTRLVDLTQIMMTPAIFRAVKRAGGKVKEKDYEKDPNPAPTPLKEDIAKLDFFEGSPVKVKEHGDFYSIIDGRHRVAAMLLKNFRQISVEVVSDN