NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208004_1003067

Scaffold Ga0208004_1003067


Overview

Basic Information
Taxon OID3300025630 Open in IMG/M
Scaffold IDGa0208004_1003067 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6206
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae → Sporomusa → Sporomusa silvacetica → Sporomusa silvacetica DSM 10669(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048283Metagenome / Metatranscriptome148N
F063657Metagenome / Metatranscriptome129N
F072296Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208004_10030673F072296GAGGMNMAFRRPQRTAVPSFQRSANTGEKVDYEIERLCGHIEVIQIFAGSNPDTSKWVQAQRDKDCRDCYQAKMVEADQASVDAGKRVALEGGPKQVPWAQSVRQSRASEMRTWLESVTAVGAGAVKAGRLSKADYDAGIADVRAGFTDLMMGVEFSDDEYDHSGYAKWWIDTRKDALDTIIARLLPDRDILGTGVFTRLSADGWTPAEDATLLPVEVEPEPEPEPVQRTATPLPGTAPEPFNPHARGRGRGPVKVVSGPAAGMWQREADELDLEDAPF
Ga0208004_10030675F063657GGAGMNGDLMSDVITEVSVQGAVTTDGRLRFRSPLDVEAWAHDHLVARLAWEFLIDGNENGVSRDTDEALERVQTRYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR
Ga0208004_10030676F048283AGGGGGVEIEITYTPALIGVGAEVGDDVDASCDAFEVQVHREVTASYPDADVTVTRDHGHLADLSVVTHGVEDRPGVLTVRQAVWSDVWDLIGPYGRYRRPVRGATAEASATVVAKAGSKPDVFTIVVDDGCGDSMIEVDEDEVRAIMRSGFGVMA

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