Scaffold Ga0208004_1000550

Overview

Basic Information

• Taxon OID: 3300025630
• Scaffold ID: Ga0208004_1000550
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14686
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (46.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F027171	Metagenome / Metatranscriptome	195	N
F035291	Metagenome / Metatranscriptome	172	Y
F047029	Metagenome	150	N
F085642	Metagenome	111	N
F088827	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208004_10005501	F047029	GGA	MSEAVGSTPNNPIKLTQYRVTLYPKHGATENIYMEAPDVYTAQQYTRRVYPDHRILAIKPLIDLVEERVS
Ga0208004_100055013	F027171	GAG	VDGFAFYSSDCCGGDQVNRVLDIESLEFDPDGLIRVTAVVDEVVLTHHATQWDPEEYGSALCRGSFYLSDEDLIPATDAELCKLIAERVDDWAPIDPDE
Ga0208004_100055016	F001841	AGGA	MGLMTPFSRPNFFLGLLRVAAWVFWRDPVAKPEPPQPKRPRKPILGYNVGDIPYELMAVVRIEWYRKGMAYEVEEYQIEECPDAQAQFQYIVGTALRQGADVSVLTQYEPAALGVEE
Ga0208004_100055021	F088827	N/A	MSLSEFASQYAPALADIASQLEEHDAVICGCSAGPQRPDDPDQRQHLAICIDNPWREPDQWVTIYSPSHCEWWSHGEEYRLSLADLLAYLRQLPRPLHSFSKYQP
Ga0208004_100055022	F085642	N/A	MGQARWPGGSLRLGGQPVTSTFSTSEPALTRTKARKQAAKDSRKEERDLIRDQKRQLRDLRYIAERQTIPADLAADFWQQLIELQHEHGKEGTTEFWWALVPKWEQVQLSRGGGLCPDDLKPANAPRLTETHKRVAAALERASHNSRTVDAAQVLQAWAMEDGTL
Ga0208004_100055024	F035291	N/A	MTTATKASPALLERIDRLAGCQGHWVLIRDGEPERDCSHQWHETPEGHLATCLADRWRNVSLGFCPSYCGYSDYSRTGLVGLSNYRVMTDAASTPDPHGAVLEIGYGWNGAGVVLDIRYVTADQLETVEALENYPLISDDDHSQLEWDGIEADWGRESIADRVRMLQDLGLCIFAARDDSAPWREGFDRLRESILENLNEYPTALA