Basic Information | |
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Taxon OID | 3300025626 Open in IMG/M |
Scaffold ID | Ga0209716_1038755 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1676 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019651 | Metagenome / Metatranscriptome | 228 | Y |
F067130 | Metagenome / Metatranscriptome | 126 | N |
F085730 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209716_10387552 | F019651 | AGG | MTTLDKFQELAKIKFIQDPLHADIEIGELNTADGYELFYITQDVQNLNYENEVFYYKPDFDYIMKEIDLAKRYDDQIMDVVCFDIEDWFDEYYMLDYLESEMDEESFEAFTNET |
Ga0209716_10387555 | F085730 | N/A | MNYKEENWYNDIIDRLKDNEGMDQDDFYDVLHQEIDNMVIYNSESQRIVDDLNYDVFQEHDVFGRADNINQAAYAALYDLFEEGDFTYEDYNNKPITQ |
Ga0209716_10387556 | F067130 | N/A | TVDLQNTLEQLYDRKVKLVAYASADGLDTLVLEGHEEDLFNFYLESFNPFNEWTNTDVVRSEFFAHILTK |
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