Scaffold Ga0209716_1018099

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1018099
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2921
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010532	Metagenome	302	N
F010571	Metagenome	302	Y
F054417	Metagenome	140	Y
F059441	Metagenome	134	N
F063076	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_101809912	F010532	GAG	MNKTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEIDIIHRIEEHMSYMVSSYLNKSYEGISVD
Ga0209716_10180992	F063076	AGG	MMIYINRKDDFGNLETVDEFGEGRKYAKEMLKEYRLSDSSAYYYMSQRPCKDWQVELA
Ga0209716_10180994	F054417	GGAG	MSRFNKQKAIDKIVDDFGNCRMNSYWFPYSETQIEWSSYQDVYLILYQDKTWDYAEPKHLDMYVEDLKVQDLKEYAER
Ga0209716_10180996	F010571	AGGAGG	MSMSTRQAIYIENLYESFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG
Ga0209716_10180998	F059441	AGGAGG	MKTWSSTITYTVFDMGADCETKEDYIEYVKETFILDHNIYLRDDEITNIQREELYNE
Ga0209716_10180999	F003976	GGAGG	MSRLYNDYYFEKEDVLHTLDKLEMSVRFLNVWVSEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEEAQ