NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1010552

Scaffold Ga0209716_1010552


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1010552 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4291
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014147Metagenome / Metatranscriptome265N
F035317Metagenome / Metatranscriptome172N
F065800Metagenome / Metatranscriptome127N
F070126Metagenome / Metatranscriptome123N
F104988Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_101055210F014147N/AMTTIKNTFEQQLHQKFGVNVMSTMGTSSAILADGGNGTDYLDYYDTNAGWIFGVHPKLQAFIDAHGWECEWQNSEVLNLYPGHDWTSDFSEEQLVSHWNAMCDYITAPLDHIYLNDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYSNPMSFNSLLNYIDVPELEEYLIAHALI
Ga0209716_101055212F065800N/AMETKFIPTNPEKLTGFDSILKEFNTINDSAYVFNDHYSSNYDVYVGEESTADGYSIWVINVDGEGPILSENVYYYQPSAYDIFNHLGGGWRDDLVVYTEIDLREIEEYMIGELCTNYDNYLNELEDAE
Ga0209716_10105522F035317N/AMTEMKLYMQRCEELRKQEMAERHAEATEEFGFCSGTTYTQWKTKTSMKGVSRKGKNFSHTKLWDYRG
Ga0209716_10105524F070126AGGMRLYQLYTYCREVIEKYPELADEVMQHFALAEMECEDDASSEEHEVELSLTDIDVLIADYELQK
Ga0209716_10105529F104988N/AMFHEVIDQDFAFIDECETIADYIEEHLYDTLLWQLPIEDEEIYQRTEDIDNYNEVHATAMNQVIAILASRFFYKTNTNSER
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