Scaffold Ga0209716_1007312

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1007312
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5591
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031863	Metagenome / Metatranscriptome	181	Y
F057337	Metagenome / Metatranscriptome	136	N
F071664	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100731211	F057337	N/A	MTYSELSTMTIEDLRTLNSMVVETIKSKKSLLALEKKDSLYVGAIVSVDHPKMAGHELKVTKINRTKAVCELINGMGSYNVPLNMISLNS
Ga0209716_10073128	F071664	N/A	MIKKIKSKLLTYLFTDWVKTETDLETLKLTTQMLKNREIQITGIKPIMGFRSHADTNIQ
Ga0209716_10073129	F031863	N/A	MYWSSDMIQMGNDLFVIKRKFKQEYFSKVLEAFGAKVVCENYHCETVLKSKDGYYYLCDKVDDAQII