Scaffold Ga0209716_1005059

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1005059
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7304
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100505914	F031255	N/A	MIKYFNEVVAELQSKGTIFGAEYRKKNGEVTKINGRFGVSKFLKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVSLNTNNTKYVKSDEFLIESYE
Ga0209716_100505915	F077286	GAG	MSKYKYTVEWEGDVANYKQDFETLEEARIAMIMHHKRNAVIHVIKIDEY
Ga0209716_100505916	F035552	N/A	MSIKDDLLISADLDNLYWVLGQLAEKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKLLSQVMNEKM