Scaffold Ga0209716_1004133

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1004133
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8438
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017756	Metagenome	239	Y
F019389	Metagenome	230	Y
F064091	Metagenome	129	N
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100413311	F087744	N/A	MPKINKNILVKFDLQIGEQSFSDQYIFHNKTTDYNYCKQFWGLKNKNELDKGVYWDNQMLNAISVYSSQEITNDEVKTLQKLGVI
Ga0209716_100413314	F017756	N/A	MSTLKELIKIQSIIDNRAIASDTLETLENKYYYSKSKGVNIKLGDMHIDHFLRSLNLQDDHRNDVDIKTAKIIVNLKQQLRKIKKITNEKI
Ga0209716_100413315	F019389	GGA	MDTWKDRFVKLINKITKKRGWQCDDMNPFFYQINLLNFSNAKTLREYKQQMKNKK
Ga0209716_100413317	F064091	GAGG	MTEYQKLESLHSQLDELIQGNQLPIDELKTLQSFVEDIREKHLTESEE