Scaffold Ga0209716_1004087

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1004087
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8515
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F030556	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100408711	F013231	N/A	MINKRNYQTCKLIKNRIDLYLYEMSVLFANLGTDSTVEEHQDAYRREKEYIELIAELDPEKADRLRSSY
Ga0209716_100408720	F005010	N/A	MTRKRKHVRELEKFLSMLMIDNVNLTIQASRFGWSEDIQKQLTNSALLIRKYQRRLRLIM
Ga0209716_100408727	F030556	N/A	MANDKVFVGKTSVITTKFGEIVKVALGPQDFEVLLNAKNEKGWVNLEIKDKRDGGKYIQLQGEYTGKPKAMAVNDTDDMPF
Ga0209716_10040879	F008384	AGTAG	MPRYDKVIIEQEAIRSAQEGRITEELGKFILQRSIEVAGSAFVTDGNEELKQSLIDAAVMRTCEKFLHYYIKNKSAANLIISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEEGEAVTKLKRYVKDDYLSEKL