Scaffold Ga0209716_1002797

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1002797
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11134
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F054789	Metagenome / Metatranscriptome	139	N
F067591	Metagenome / Metatranscriptome	125	N
F090175	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100279720	F054789	AGGTGG	MNREQQRKFDRIAASRLSRIKGGIPRHIALSNSRSITLRNKLNRLGLEGPHIEAALSMVDEMGLQEVMSKQPLGSRFASMPQAKKKPKVWKS
Ga0209716_100279721	F009527	GGAGG	MKRDMFPPSIVNLLLQEGQRFTVEGKKREALGTGIIPVIASARGGKTSLAYAFIDYVIKYTKRPVILDSFPQKVIDEGIPEHWIDRVSNTSFNDIAEVDEPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVIFTTQSLSGIDLSLLRYTTISPVVRWVDKDLIAQERKEWRGEVEHGQYELRRVCKDSRLRDFFWSSKDSCLVKAPYPEFLKKENDPIKADLLSRPMRYHSIEDKKIMLGIIKPPAKQRAKRKKVVIDE
Ga0209716_100279722	F090175	GAGG	LSDEESSNTTTLPPNRGRTWADVFIGATYVTGGLLFLGLMATGLYFVVGKVPMWFFIAIGTSLIFIPFMIERAKDDAELVIVSDGPHRLTEYRIGNKVDLEIEGNAVRFQSKSGVNRYLLSSIDVDSKTGVGSEFAGYSQIDQVRDLTTLQRMVEMLQSTLKESRVSAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEISEAFGVDDENMALEPNETLEELAEDFE
Ga0209716_10027976	F067591	AGG	MVSWQKQVKNIAMALAVVGGLWMALTVGLGDVFNIITDPSSVDPATDTALGGIDFIDRIAVAGVVITLVGSAGLGLISTSSNNPPALNTILRTAPLIIGFVAFSAFGTEAWDLVTGNRTWGDYGDIENSYMLFLASSMVAGIVGLLDR