Scaffold Ga0209716_1002522

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1002522
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11941
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (80.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067644	Metagenome / Metatranscriptome	125	N
F085805	Metagenome	111	N
F099990	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_10025221	F099990	GGAGG	MIKKYDEIIYNINFNHQINITKKDIYLKNGWLFIDLKDSTIEVFKYPVNDYFEPYTHLWNINKKPFKDFINNEVDFTGEYPKEKKPPKIQFYKTTIASGIITNKQ
Ga0209716_100252210	F067644	AGGAG	MFKKEMSIKEFIEQPEIQTLIDKGMMTVNAIDEQEEIYDENIDEFVEEINKTGMLK
Ga0209716_100252211	F085805	AGGAGG	MKSKSISKDADRIVSGLLVCKPLADEVYNKLRVLALKDEEEFRNNRYQERVKANNNWNCG