Scaffold Ga0209716

Basic Information
Taxon OID	3300025626 Open in IMG/M
Scaffold ID	Ga0209716_1002254 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025626 Open in IMG/M

Scaffold ID

Ga0209716_1002254 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12896
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12896

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017162	Metagenome / Metatranscriptome	242	N
F022761	Metagenome	213	Y
F031698	Metagenome / Metatranscriptome	182	N
F077184	Metagenome	117	Y
F083396	Metagenome	113	Y
F092752	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100225423	F092752	N/A	MSLDSYYAMTAARRNNTSMESEMEKKGYVKDYYIGAGAWQWKKVLKTVG
Ga0209716_100225425	F022761	N/A	MKLKKYNIAITKPWSKEMYAHNDEVLREVVEEVKSKWLVAYHDLENEYYIGSSDDESEFQDAPWNQEADVILQDIQEAVLVTSYGSGFTIHDVHNDVHQELEVMAYWRAKEVAEDLSLSLSKEFIGLG
Ga0209716_100225429	F083396	AGG	MKNQDLYHDVAAAETVDKFRRVLMNVFDGDANAMLGELESRMVEKEDYETAAQMRDIRNKING
Ga0209716_10022543	F031698	AGGA	METNMLLGILIGAGTVALLAFFAYRVKVSFDRVTRNHEDLNTDIYSSLSQLEKQVDQMIDNVDRSLNDRVDDVYRTLDSRFDKTESRIISQVQKKK
Ga0209716_100225432	F077184	AGGA	MNKLRTYRITSIILIVICTVLLIKSNYHNSEKANIIDKYFDLQSEYDKIYDNVQELEVYSERLENQIDILTSFIADSEYEIDTVTSGKEIVR
Ga0209716_10022547	F017162	N/A	MVTKREQKDGRVINLPVYVSNHITDEMIRLFLETGKAMSVNAGRISEQVVLPYLETHFKCKGEVVDADGYDHLFKNGIKNEHKKLVITGTKTTAIAKRLGENKRGKCDTISFHHPAQNAIYVIKADTFYKHVSLNHDKYCNTYDVMFYRDMQLEGKGKRLKSYTRDNTEMLLKYATKLEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209716_1002254

Overview

Ecosystem & Geography

Associated Families

Sequences