Scaffold Ga0209716_1002195

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1002195
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13153
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009180	Metagenome / Metatranscriptome	322	Y
F033064	Metagenome / Metatranscriptome	178	Y
F036972	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_10021952	F009180	N/A	MKCKAGDFAHILYSMRPENIGRVVKVVEYIGKFEEKEQWQFRGMPCQAPVHDHFWWIEADDLASGFGPSPKAYIADTWLEPIKNPNEKIEEKTEIELDMFL
Ga0209716_100219525	F033064	N/A	FRRNKMATYDFTPKANSLSDLPSVGGNNVVGTLETTGALSMFLISLKSTSNGDDTALDLKTANDGAHGSLYDLILREVAPLMAHAVDGTTGVMSVVVDSHANTAASIASRIEALSGVGTDTTVEAAASFAVTA
Ga0209716_10021953	F036972	AGGAG	MCSPFVRKEANRYFWLVKGHLIPKVEPDEVVEGYYNSYFKRLWNDESGCLEIYERGFETAYAVREAEVLDEERSYVAVLGYD