Scaffold Ga0209716

Basic Information
Taxon OID	3300025626 Open in IMG/M
Scaffold ID	Ga0209716_1002052 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025626 Open in IMG/M

Scaffold ID

Ga0209716_1002052 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13776
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (18.75%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13776

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (18.75%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013533	Metagenome / Metatranscriptome	270	Y
F031863	Metagenome / Metatranscriptome	181	Y
F053967	Metagenome / Metatranscriptome	140	N
F056582	Metagenome / Metatranscriptome	137	Y
F071647	Metagenome / Metatranscriptome	122	Y
F097115	Metagenome / Metatranscriptome	104	N
F103238	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100205211	F103238	N/A	MTQIKLKEIVQEVLTINLVDWLTKSQIELIELELEVAGIDSEQSVTEFIFSKSRTFESSL
Ga0209716_100205212	F071647	N/A	MTLRKTISKSEFTKSIEQAKSNPFNVVRQPSKSKYVMRGGIPHKWVDGSLVSLTKLSK
Ga0209716_100205216	F031863	AGGA	MLILIYNSMYWAKDMIPMGGDLYVVKRKFRIEHFEKVMQHFVGANEVCENYHCETVLKGRDGFYYLCDKVDDAQII
Ga0209716_100205219	F056582	N/A	MARFKTYKIENTPTDSLPEMVTISKKVKGEIFEKKFISVDKAKAWIEFGAAYKLIANGAKKVKGELSSIGLISDTAW
Ga0209716_100205220	F053967	GGA	MVKFDPNNELNEKELELLGESNFDDFLDYLDQKSKHLKTLTRPLSSYMSKRYSSISTMSQGKELSIEQIKKAGDIGKQNDKEEFDKIRERFEEMEKNDPKYKDEGIKNIKTHRSQWFD
Ga0209716_100205226	F097115	N/A	METIYIILGIVSTISIFLLGYLLNVIFNLKKQVDYLESYLEDTDARIDIVVSKNAQQLKEQLDVLEERVTEDNRDIKSLLDSRLDKLEYKFRADVTSGTEVLKVIEESKKSNERLDEFIRTFQAQ
Ga0209716_10020523	F013533	N/A	MFEAEQIKTVEGFKKLFGEPKQGMLMDLSNEFIDSYHRYGTDPFELVDGFGLDWVKLIMDYNESIEEYELCAVFRDVINDYIETKIKIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209716_1002052

Overview

Ecosystem & Geography

Associated Families

Sequences