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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025626 Open in IMG/M |
| Scaffold ID | Ga0209716_1001603 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16539 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (16.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F064880 | Metagenome | 128 | N |
| F085895 | Metagenome / Metatranscriptome | 111 | N |
| F092352 | Metagenome / Metatranscriptome | 107 | N |
| F095740 | Metagenome | 105 | N |
| F103549 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209716_100160311 | F085895 | N/A | MNVDEALKLLEAKVEEDIHELTPKDRLLFWANLLEFNKAKIQRIPFEPVLDGSAKIIIEYENNTTTAYKDIPEPLDKPKED |
| Ga0209716_100160320 | F103549 | N/A | MSCAGIFSGATVSCSDPLAVGIEQRLFLANLEDVASFTFDGTETNMVTAITMKATKTFFEFEGLKQSISTQSEYMPKPYSVGYKHTVDFSVFNVTAEQRRNLEAMAFQPQVAIAYGPNDSSLGNAAFEILGINAGLEIVTNIRIPADNETGGAYRIQLATPDAGGIESQLPSVFWTDPSTGTYASALTAIEALLV |
| Ga0209716_100160324 | F095740 | N/A | MEEWLTEHWATLLAALGLGGGGSVVGHKMVDKIQNKKIEKLEIKVSEIDSNIKVNDGVDKQFRKEVDTRLGNIETSLSTLTNHLLSKKK |
| Ga0209716_10016037 | F092352 | N/A | MNIIATTLKSIIEAQGLTYLRAANPSDLNELVGNYDLSAGVGVYANLPTVDNITYSQTNNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKVDGMIDKLNASNIIALSSFIDGYELEAIESINITSEVLSGWKLSFVLPIFRDTFECA |
| Ga0209716_10016039 | F064880 | AGGGGG | MKKFKIYHDDDIIGGQIPDSWEEITVKQWAAMRPNSEPIELLSIFSNIDLSHLENTRADLSPIIEHIYEKLILNGMNELDHRPRKDLSILGHQIKFPKDLNFERYGQKFMLKKLTQEKDDMREIVADALAIYAQPLIDGKFDGHKLEPIKKAIESLPIVLAWPWCVFFLRSLNALKTTLSIDWQPSQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |