Scaffold Ga0209716_1001428

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1001428
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18034
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F007114	Metagenome / Metatranscriptome	357	Y
F024892	Metagenome / Metatranscriptome	204	Y
F064116	Metagenome	129	Y
F069992	Metagenome	123	Y
F097122	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100142810	F064116	N/A	MKDLIDFKNAQITALQKRLFELETKVGNYETYIFELTDENYPTEYKQIVKNELLKTE
Ga0209716_100142813	F001728	N/A	MNDIKLKPTENEDHYRLLLNGVDVTGEQERSVFRHIIETIDNGIEVGI
Ga0209716_100142829	F097122	N/A	MKEQLKDKILSIRPEYSTEGFSSNPLPNEVSIYYEGEDFTIDLFLDINEVLRIEILEGEDIYDLSYEDVIFLCGYLSGLLEYEIQITKNYYDAERGQQDNYY
Ga0209716_100142837	F069992	N/A	MYTLKINNNLSRKLISTNKGFICYNLTDDKTQIDDFILTDDLYRYKNRYQSFKALSCIKKQFNTITF
Ga0209716_10014287	F024892	N/A	MSKEYKRKEYSFSLHKVDYTDSYTKEMDCEGLSVLKWSMFDSPDKLGSGKYFMESEPVFILDEVFRKDRMSGFILQGYTSKTYADKIALPSNSGHRVGKSIKFRCINKTKRFKMIRGLIQYGIERIQVTNEWIYFDTDNYLKDPEFNCV
Ga0209716_10014289	F007114	GGA	MESITKINDSAWEKLKKQIEYHLEQDSNLTDIRINYQVKIPERGTRNYLGLNVNINE