NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1000974

Scaffold Ga0209716_1000974


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1000974 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23528
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (92.68%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028649Metagenome / Metatranscriptome191N
F049595Metagenome / Metatranscriptome146N
F058958Metagenome / Metatranscriptome134N
F064194Metagenome / Metatranscriptome129N
F067690Metagenome / Metatranscriptome125N
F093803Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100097420F093803AGGAGMSNVPEGFQDWTLEEKSAYWDKQRVKDRAERQKGINKLSQEQRDAVKEAYEAISGAMQSMHDCQDLWMSDVKKLDESMWQLRRLFNLEGNDD
Ga0209716_100097425F064194AGGAGMKTYLVEINAVVWKQIEVRAESVEAAETLAHEMFNLAADGCPERYDQQTSQIWEDDSPNIRNWKEVM
Ga0209716_100097427F049595AGGGGGMQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTKDFHIRWGDALVIDQRFANDIAHQLIEEGWVIE
Ga0209716_100097428F067690GGAGGMDKMIELEFKLRDGGSYYLCDTKFSVMSGRIRRQINAVEHFVEHYASVNGYAVKHSYEEVVEMIRAAKGVK
Ga0209716_100097432F028649AGAAGGMRHAFVAHRRTVAKRMTYVWGMMIIATGTVGLAGYHCLFIDDMFAIVTGIGMISIASVGVPWSILGCLFNIQDMNRG
Ga0209716_100097434F058958GGAMTLRNQIIEQLGGRLFTATFTKLDGSTRQAYGQIIADDRLTDDHPNVISYIDYSIAKEMHDAGKSNIRRMKLEAGTYTIKSGKTIISNQA
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