Scaffold Ga0209716_1000720

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1000720
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29063
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (74.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F004322	Metagenome / Metatranscriptome	443	N
F025147	Metagenome	203	Y
F099217	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100072019	F099217	GAGG	MTEQTDRLIAEIEKERTSERASNGFKFHYNTIGDCFYDIYCQPNYTKKEDLLKDMARILNGELTADDFAKEIIQWVGERSDECYLDDDCQIRRFDEVKEGSVSVPIAKQGRS
Ga0209716_100072021	F002928	N/A	MKNYLVKFKCVIGDYEHIDYMLFNKKKSEWGYCKEFWGISKKDELKENCFWDDWMQNAISVYSETELTNEQTKILKELGVIY
Ga0209716_100072025	F025147	N/A	MTLSNKKIIKCPSADNCNLQDYNFKGRPKKDNSSKGDIFQNCRCCGEYIRGDFRSNIDGRYCQDCL
Ga0209716_100072026	F004322	GAGG	MSKSTYPTKYQLEHLKKRINNEIDPLIEQAQLSVKSIIADYTESAELKLAKKIKADVVIKELEDAIANLEIKQRKAQTFFGKIKDTELKENLNYKFRQSDNDSYYSRDRYGKGIQPEDCREQLREWAQHLAQKQAESTPEGKKVKELELYKQSAINSVFECGVPEQLNIVLEKVLNGVGIVWNKTKALQLENKQYN