Scaffold Ga0209716_1000502

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1000502
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36692
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (24.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013232	Metagenome / Metatranscriptome	273	Y
F020899	Metagenome	221	N
F057685	Metagenome / Metatranscriptome	136	N
F096045	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100050213	F096045	AGGAG	MITLKSILEDAKINTKIDEANDTYFKSFTDAVEFARKATEKRGFTIDEDDWQTQIAFGGKYTRSRPSKGKTNSFTVGLLKNGKPQRKSLQISVFGMPSGSYELTHYIN
Ga0209716_10005022	F020899	N/A	MRKYIVLILFVILSCQPEDLMIVEPLPQYEMIFEETESSVTDGQEFSFEIISEEEHHLVISKDGSVIAKESFLPTLELNTRKIYTKSLPKDLLQLELINSNGVIKNTFIQIY
Ga0209716_100050252	F013232	N/A	MSDREIMNAKSGVPMWWKPGIAFLKQDWINHPHLKHFRNKKSTDSKCDCSSPKLVELWEHDSCVRGRIDTTVCVKCNEVESLSIIR
Ga0209716_100050253	F057685	N/A	VEEYVDASWKCGCGSLNAGWRTTCGGCEEKEIMENKTPKTDLLKILNTIKEDFEMLQDGSWDLRYSDGTEIEASLDNVDKAIQIVNKELHGK