Scaffold Ga0209716_1000443

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1000443
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39563
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (14.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008577	Metagenome / Metatranscriptome	331	Y
F008695	Metagenome / Metatranscriptome	329	Y
F017299	Metagenome / Metatranscriptome	241	Y
F052198	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100044322	F008577	N/A	MGNINTTKLTWEEIKEIANRLDKIVGNYFHDAMYDTIHDRPGDEEVLVSDEDIMLIKEQLKRIL
Ga0209716_100044326	F008695	N/A	MNYDIDKVEHVWCEDDDRWIYLEYNKQRKIIGMNFMQGDFYEGFKKDWCKSDPGLTEFYNSMLYTFSIEKASVSTLSFINKCMWTFHTAIAQREEFPQ
Ga0209716_100044333	F052198	N/A	MTKAELQDKVNELEITLNSLELNAKVVKDDLKIVEGQLEAVNKVKITRDIVNDIRDVIEQSINASSLSNVDSYEVDFEIDYNNSLALGSIEFNDTDQLSEEISDGIENLFNIISDEDEN
Ga0209716_100044336	F017299	N/A	MHKEPLKITLNYYNKEISTQVDRSDLTLEELHELWLEIVKAMGYHHKTIDEFYE