Scaffold Ga0209716

Basic Information
Taxon OID	3300025626 Open in IMG/M
Scaffold ID	Ga0209716_1000182 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025626 Open in IMG/M

Scaffold ID

Ga0209716_1000182 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64117
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (18.60%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

64117

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (18.60%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F002164	Metagenome / Metatranscriptome	588	Y
F002344	Metagenome / Metatranscriptome	568	Y
F004520	Metagenome / Metatranscriptome	434	Y
F004850	Metagenome / Metatranscriptome	421	Y
F008944	Metagenome / Metatranscriptome	325	Y
F027242	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100018256	F001740	N/A	MYNPNNPSNWSWSKAFDEMNQTVNQAELTQQCINHVLNYPGEANGVFMTLNKTQQDDVYELLNQIL
Ga0209716_100018258	F004850	N/A	MIDNYEFEIYYGEIEEPLYLTNDKNYICDDMRDFMEELGIVMEEVIYKVQVI
Ga0209716_100018261	F004520	N/A	MILTNKEKDEITWRVVDSLYEKLANELEYELEDHNDFIETNDEFMDLFNEMTIKIVKYMRSELFQPMTNEDLKQ
Ga0209716_100018267	F027242	N/A	MKDTNAIEQALKDKCKKEISKVVNVFMNELETKIRGEYNSASYYDFTPPNNENKAKFHVMGTSQLENVLFRMISNAHLESMVALKSKELIKKLELV
Ga0209716_100018270	F008944	N/A	MKKFNGMESHLIIDALTFYVAQVESDILQMEKEGKRSIFAPGFYTNISKELKDKVKSMTKKQITN
Ga0209716_100018271	F002344	N/A	MLYDKLKPHIKAKLKENAKEYESVNWLFDKLKQKDNYSDLTIDELRSVCTFGDVWYHDLTQSQLIWGEWLINK
Ga0209716_100018280	F002164	GGA	MRELLKKRRCLSHRKYVSQRMAQLQNELCQEAIETGIVNLEKRKQLLKYKHHLKNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209716_1000182

Overview

Ecosystem & Geography

Associated Families

Sequences