Scaffold Ga0209716_1000139

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1000139
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75717
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (40.45%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001040	Metagenome / Metatranscriptome	795	Y
F020797	Metagenome	222	Y
F025153	Metagenome / Metatranscriptome	203	N
F042580	Metagenome	158	Y
F047319	Metagenome / Metatranscriptome	150	N
F052892	Metagenome / Metatranscriptome	142	Y
F057666	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_100013912	F025153	AGGA	MKFPIEKRILNNFKDLELIKLKDILIEQIGFQIPGSPKQKNIGRKTRQEFAKFFNNFEAGNTKTAISGYAEQIMRSDAPDEVKENASKILNEMEKVAIDIQDELHTRQISDDEVAETIFDYVNSEMDASDSIEFEQLLWYDNQIDSSINSGMIENAVAIMDQLLHQLEFIRGFILQEFPKISPAGFKR
Ga0209716_100013917	F020797	GGAG	MIKLENILKSIPNQEIVESHLGQWEYPGRITRIPSNTITMQPDPRTGKEIEHILLIIGDQSGEKQIGIPNGPNLFFPNDQSVTEYPIGKSEVYKSRKK
Ga0209716_100013925	F047319	AGG	MYNQGETVIVTEYINKKANEVKHSVGVIMRPFIHKKQTFYDVLLERRTGLSFLNTAKSSKQSFINRELTTKLIDSDSIKTTIPFKAMLEFEELPIMIA
Ga0209716_100013926	F042580	N/A	MARPKLPEIDKLKKRVRKRYPGSYCVQDSLGEYYITWNETNLNETFLLDNTSTEIKAWEQASITAKHEQHINRTHPLKALMSQEQKNLNKERITKRIRKL
Ga0209716_100013931	F052892	N/A	MRPTNSIYIPPTIEFQHKRFNVKRLVKDDPNENIEYWKNIIEHDTVLRKDGYLWFLIEITPVEIIEE
Ga0209716_100013969	F057666	N/A	MSNIDNMYHQYFGMKSQTNEADLINKISDYKGGFLYKLIDPATAGNVKADIQAFLNKKGMHVIKTKFDDASGKGFFYVRLGEDPAKESQRIQGFISQLPEVEKFKFTLRPIQKQQVTPNPSNE
Ga0209716_100013973	F001040	AGAAG	MAAPRTKYSIQARIKYKGNLVDVLDRIRAIRMVLMVHIEQDLGKGSELITIKVLSPYSAKKTFQAIQQLSTRKIETLEQMALLNSTLTKLQ