Scaffold Ga0209041_1016888

Overview

Basic Information

• Taxon OID: 3300025623
• Scaffold ID: Ga0209041_1016888
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2775
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F019662	Metagenome	228	Y
F064100	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209041_10168882	F064100	N/A	MTRVSKRKIKKFLTLNLYKNKDYYNKELELAIEVIQDFLNCDPVHIGRLQGNTFTTVYEIDNEVDNES
Ga0209041_10168883	F019662	AGGAG	MTDKEREDFEWASDFYLYDDLDGDWVNWDEEKLFEEISALAWQPFEHWEGKDIYNEINKLASSVRQKIEKETNDQSI
Ga0209041_10168884	F001086	AGGAG	MADKCTSWAIVATMERPDGTWYTDTITEIDDDTASSVDTFLTEYCEDKEKEND