Scaffold Ga0209041_1016627

Overview

Basic Information

• Taxon OID: 3300025623
• Scaffold ID: Ga0209041_1016627
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2805
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209041_10166273	F016619	N/A	MAITIAQNADHKSLTGKTLSIQSELTSKLKSTIVDVTYGASDNYATNGNTVDLSLGSRISTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSSTATVVALEELDNADTAVNSMTIRIRVIGF
Ga0209041_10166274	F087902	N/A	MTYTNHNAKDVSADGVVKAGHGVIVSVHVTKAGASGDKVVFHNGDANSDPAEFTVYGEGIQNIQDVMRRFENGIYAEVTGSTAKYIVVFK
Ga0209041_10166275	F034394	N/A	MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPIFLQHRNIYELNTSQGDKIEIWKGESDSWENIVGQDQWYHAEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTTIPLDVTDAVIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRFWQEDIDLCVSNRREVFVLP