 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025623 Open in IMG/M |
| Scaffold ID | Ga0209041_1000820 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20688 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (58.54%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007003 | Metagenome / Metatranscriptome | 360 | Y |
| F047713 | Metagenome | 149 | N |
| F074009 | Metagenome | 120 | N |
| F092887 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209041_100082010 | F092887 | N/A | MLRGEVSVVISKPIRRNKNTPKSVVLIEPPRKVSTHDRIIKILKKHKNGLPLIEIQYKTKVLSMGNLHHTIVFMVRAGEIDKEKCPHCSSTELYKLHI |
| Ga0209041_100082017 | F047713 | AGGAG | MEIIGQGEVAALEIIKDMFGNSCDYLTQVKLSDMVSPEYLETFSDRQLKETIDIVVVTLFECLAIRVQDKHHSSSRMATIDNIQKLMLEWNGWKVIDVWHYECKELWKDKVNKKSRLELELAIKESSID |
| Ga0209041_10008204 | F007003 | N/A | MLSIRWLIMIHYFTKNIDQKKYNDIIQRIIMINGHDGTNNSGYKAWQNFEENWTLNIIPVTDQEDFKVYYNHLNVETSDGIAWGVTGSKVIYMFINDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRKYDSPEGRANTRGAAATVIVHDNWYGNKKTIKIWIRWSMIWLPITIPFIPVKEAKKQYPI |
| Ga0209041_10008205 | F074009 | N/A | MGTKIKGKYAGQCKICGSDWKVGEDIFYQKEPKAICSDKECFEEQGGKFTPYSGQGTLTNSGGWGKTPIITKLPDVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |