Scaffold Ga0209264_1137599

Overview

Basic Information

• Taxon OID: 3300025622
• Scaffold ID: Ga0209264_1137599
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 595
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010879	Metagenome / Metatranscriptome	298	Y
F016206	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209264_11375992	F010879	N/A	MAQIQKRKILKEVLFDDVEEKTEYEFLTRDQFFAKVPQRPLSARGIEMWERYLQDPKGFK
Ga0209264_11375993	F016206	N/A	KAMGAILKVPKKVEKTAKVAVKYVNHTHWDTKEAFFAAIQKTGLSSDKVNVNAEWDLYQSDTEGYRNHLKLEN