Scaffold Ga0209264_1000870

Overview

Basic Information

• Taxon OID: 3300025622
• Scaffold ID: Ga0209264_1000870
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19266
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027418	Metagenome	194	Y
F048788	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209264_100087010	F048788	N/A	MENNYWIVDDLLIFKPEFNEELTDYYDVINKYKKIKFSNYNDPLIAIEIHNLYNDKYIKKYIKNKFNQKIDLSNNINLTHLTFKYKFNKKKYQKILKQ
Ga0209264_10008708	F027418	N/A	MNSCNNQYITDNLHNNIEELYIYETDLNLDNLPNSIKKIYIDGYKKEINNLPNSIEYLELKYYYLKIRKIPKNLKTIKCNKEYKYINDFKDYKVITH