Scaffold Ga0209504_1028728

Overview

Basic Information

• Taxon OID: 3300025621
• Scaffold ID: Ga0209504_1028728
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1960
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004166	Metagenome / Metatranscriptome	450	N
F006870	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209504_10287281	F004166	N/A	FVMLIKYNHLKKLPLFFLFGLLISCSGDDTHHSWGSYATNKESKKQEFWFTSYKSRDECIADMQWQIEGGEDDSRQKISNWHTKPYGCHFMSNNKWLSIYNYLIYKDENLGCLWESSNPNVRIKYSVTLKTFANVPEQGRCVLGD
Ga0209504_10287285	F006870	N/A	MKKINLFFLLLLSFATTTQASSLETKLSPQGADKYNFLITGDADSSEKKLRDIFQNKVNEVCGTRFEIVSIKVDHISKEGAKKNILNGTFKCFVNSQM