NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1027754

Scaffold Ga0209504_1027754


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1027754 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2014
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022391Metagenome214N
F088530Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209504_10277543F022391GGAGMTQGDYVKINSTNEVDAKIRHLESRIREWDYQTALTIKLEPHRDPSSLSQEALFNIWCREIADAMKPKTPAADAEAWKLWLKQKYIGTYAVKVGKETIEGQVYATPKAKGKMSTFMHSVLVFADTKLNVRLSVPKNSEYVRVRQNELEKESKQKAKEEANDTTGSGKGSSPTAKTGSPKSEQQLGLL
Ga0209504_10277544F088530GAGGMSIDYNKDLSKKEIQAAWDYALLSGARHGVKMYRVFADFLRAIGSNASDLYGRSYKKYYEPEFQGFFDGLELNRCRDRQRDGRLSCQFKMNDALSFVGARCLPLQLALLDKRVDLDDIVSNVRHYKWVRKNHTGKKTKKRTNDSYRYVNLKSKTFAHQWSIVK
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