Scaffold Ga0209504_1021688

Overview

Basic Information

• Taxon OID: 3300025621
• Scaffold ID: Ga0209504_1021688
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2430
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010313	Metagenome / Metatranscriptome	305	Y
F015461	Metagenome / Metatranscriptome	254	Y
F061764	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209504_10216881	F015461	GGAG	MENILAELKAIMQDAQEASARAGEYKNDIDRGINVNHTPEYDTSVTKQDKINSLFEYLIDAKDDMDRVKDSLKDIHNKLDDLLELVEYENIAEEIR
Ga0209504_10216882	F010313	GGA	MTHEQNIIKGLDDAAMARVYHRKRQATNKAATFTERLAVILAKLTGLLYFGFLCFCVGYFSTLYFDGWLIEIPGYFSYWIDFGRTQ
Ga0209504_10216884	F061764	AGGGGG	MEWRVYVIACGNRQWYYATACKSEALDKLAVLERRHDSRYQFEIQPVTF