Scaffold Ga0209504_1002262

Overview

Basic Information

• Taxon OID: 3300025621
• Scaffold ID: Ga0209504_1002262
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13306
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (54.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F022856	Metagenome	212	Y
F026884	Metagenome / Metatranscriptome	196	N
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209504_100226211	F026884	AGAAGG	MQKLKLKDYLQTMSHPSKIFDIEVIIDDMVYVGKEIRAKDKEAALKIMSIMSGGEVTTQSEIIHLQERMVH
Ga0209504_100226216	F002399	GAGG	MTIKTKSHKSIIGQLRKKYGLKDNTPIHKVEQIMTPEDWQAFSMALTFPNGKPTRGK
Ga0209504_100226218	F035770	N/A	MAEFAYARHLRDELGHTGEIIYPNKDASKQHTDGTWLLLTITGERLGTVSPNGTVRTT
Ga0209504_100226220	F087206	AGG	MSNIYNEQELEDIQSYVLEQDRKGLLEDEISYISFAYNLHPDDDRDEILEFITESILYEKNVGGLV
Ga0209504_100226223	F022856	AGGA	MTLPNRIVGNLRDILGKLRDILYTQMPNTRVGDAHISIHIHMYRRAIPLRGIDSLESTHACAGER