Scaffold Ga0209504_1000481

Overview

Basic Information

• Taxon OID: 3300025621
• Scaffold ID: Ga0209504_1000481
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34888
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (69.81%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F002716	Metagenome / Metatranscriptome	535	Y
F005495	Metagenome / Metatranscriptome	399	Y
F006845	Metagenome / Metatranscriptome	363	Y
F009521	Metagenome / Metatranscriptome	316	Y
F018155	Metagenome / Metatranscriptome	236	Y
F024920	Metagenome	204	Y
F036651	Metagenome / Metatranscriptome	169	N
F037180	Metagenome	168	Y
F058166	Metagenome / Metatranscriptome	135	N
F080492	Metagenome	115	N
F094536	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209504_100048111	F002716	GAGG	MSQFRLETELDMAGYLDINFGHGVSAVYTNSVTSTTINVILNNEYVEQEEGIGVEALKPIAYCRTIDIPNIAFGNTLDISAIKDTNGNILKAAQNYTVVNIQSDRTGFSALMLEEI
Ga0209504_100048113	F005495	N/A	MLKWNGGSNTPNSNMKKYKILTDTMAGGSKVHAGDIVELTESEGHSLCGYGKAEVHVGKPKAQKEDRSVGLETSKVKAPKTRAKK
Ga0209504_100048119	F080492	AGGAG	MSKVHHTQYKKNYKKYILECLETEDELIGKNLSDDEKINYLFDRFGNEYGFQIERIGEYRAMTEWLSGLAINIPYTYSDIIELAIDMGSIDNNPSEALKDRVIENYFSFMASVILSFKHKWVA
Ga0209504_100048121	F009521	N/A	MKYKIIINNGTLKGFLAFRGSCLATMQDKFKRLELQGHKLKLIRGK
Ga0209504_100048125	F024920	GGAG	MIEELLDKYHEDDFDDLLIEIIKHMQEQKETREQD
Ga0209504_100048130	F094536	AGG	MRITVKDNLKDLRKQLDKDLNKRDFNKIMARAMNYTGERVVNAERSHLKDKLDNPRPQTVKSVVISNFAKPRSNRLATRVIVKDWAVKFLHYIYTGENEPARRQKYASPTKDGEYKKGKYGNIMKLSAKGGLLSRVDKTKDSQRKGSRFQGVPKGEGSKTYGIWERQGKKGREGLKLLVAFTPFIKHRKFIDFYKVGEKVIKSTLHREINRQFARHLKR
Ga0209504_100048135	F002221	GGAGG	MSNYYDEALKDKLKQLRILEAEANVKWGNWKRIYKMVGVDFEIKFLKAEQLLKTSLQKDTIKKQISMVDMMIRAYEQLNIKCEESGYIMIQPSARCFTFDKKTALICDTDEEKPVLELIHKDEKDIMVFSIEELLRCIPQDFMRAKEILSKLDKSVNFQRIDYD
Ga0209504_100048137	F058166	AGGAG	MDILGGMSNSTEGQQVYLAFKTADQQFFVNGKTPIDFKYLQLDPATFKSGWGRYAGEYQYVWDDNFGKASTKPGDDWKRAFSCCVMPHGHEHALIWSRFTFAESSAFNKILSSFWNQMDASSDSLPVVEYKGSKEIQVGIGRSSELTFEFSKFAPRFDNFVIPSFYGKEDEEVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF
Ga0209504_100048138	F006845	N/A	MDLNSYLLQEDFEEFCRRAYERISIACDVFGITNDEDYYSFKERCYTQLEADYLNSIDRTIH
Ga0209504_100048141	F018155	GGAG	MGQNSKAVAKRREELKNEKLDKQIAYYYFQKGAGTHYREIKYQSGRVVRTDFDA
Ga0209504_100048145	F036651	N/A	MVTLLITKGEYLMDIQFNEVGKVKPLILTKRQIRGYYKDYLTGENKVQTANEEYVVRDSLLEIAYLMGEQR
Ga0209504_100048146	F001942	N/A	MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLMVEFGNAKYTVQVKSRRATKEKKFVFAAENSRSMSGTYKNYHCDILAFVFFYDEHKRILFKSNTSSQNYFTFDKKIITDTMEIDSLQESLDTLSSVPVLNPII
Ga0209504_100048148	F037180	AGGA	MSELAKVDDKSTLNISLSYLLQIIGAIALAVWGYANISEKIDFNDREIQNLRANQNKYIFPDIRVLEEQVIELEKEVLILQTELDLHKKEVR