Scaffold Ga0209405_1112872

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209405_1112872

Scaffold Ga0209405_1112872

Overview

Basic Information
Taxon OID	3300025620 Open in IMG/M
Scaffold ID	Ga0209405_1112872 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	758
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F095495	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_11128721	F095495	AGGTGG	VSRCKACDKILSESELKRTDYNTDKPLDLCYNCMSISTNAALAFEGGGILDEEDNV
Ga0209405_11128723	F019141	GGAG	MSKIKEELIGYEQNDWISKEDHVRVDEVTEYLLYAMSVAEMQQAARQHIQHDLYTMARSDFNKVHYDTIGVHTK

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