Scaffold Ga0209405_1007854

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1007854
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5427
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030435	Metagenome / Metatranscriptome	185	Y
F033796	Metagenome / Metatranscriptome	176	N
F053299	Metagenome / Metatranscriptome	141	N
F059965	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100785411	F033796	AGG	MSSDENKTYKVAGINKGKGKGVTVLDGRKRVLEEAEQSAKLLTGKYALENSVGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGQEDTPSVEINRQAEGSI
Ga0209405_10078544	F030435	AGG	MNNQEILDMCRRLASKYYNHQDYDDIVSEGVVLCLKMRAEGITDPPKLYYSARTAMFQYVNVGLSKLSYPKGMAGRDAAVNDTTVYVDPDEAQITADDLFGSYELKDSIEVLKKHLTPREWKVFLSLYNNNNNLTETSVETGISTRGLLDIRNRIRNKIVTFCDFVI
Ga0209405_10078545	F053299	GGAG	MSKDYKPYYRTDKMKQEELRTAKYVSILFFTMVLFSFIGFAFVLVKSMLYMTGLFL
Ga0209405_10078548	F059965	GGAG	MPIPPSMEMELMELGILKSDTEELESVAEQTGFYALRAETIAWHNTLIIDGEVMF