Scaffold Ga0209405_1003326

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1003326
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9824
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F007772	Metagenome / Metatranscriptome	345	Y
F008577	Metagenome / Metatranscriptome	331	Y
F017299	Metagenome / Metatranscriptome	241	Y
F023446	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100332622	F008577	N/A	MKLTWEETKEIANRLDEIIGNNFHDAMYNVIWERESDEEVEVSDEDIIAIKEQLRRIL
Ga0209405_100332624	F023446	N/A	MSKNVEFIDKLCELMGDGFFLCDQYCQDDLFEMQDSIAKHIADNANKGLGLAKYMVTKFPSTFTTK
Ga0209405_100332625	F000352	N/A	MRNIKLTDGDCTFVHYVLRMYANQTANLDEDDKQEIYEVANKFK
Ga0209405_100332627	F007772	N/A	MATKSYQLLKISWNLYDTHFTKLTDEQKSKVIDIYYDFY
Ga0209405_10033269	F017299	N/A	MQKEPLKITLEFYNKKISTEVDHSDVKLEELHELWIEIIRAMGYHSKTISEFYEE