Scaffold Ga0209405

Basic Information
Taxon OID	3300025620 Open in IMG/M
Scaffold ID	Ga0209405_1002157 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025620 Open in IMG/M

Scaffold ID

Ga0209405_1002157 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13118
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (21.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13118

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (21.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016811	Metagenome / Metatranscriptome	244	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N
F050369	Metagenome / Metatranscriptome	145	N
F056899	Metagenome / Metatranscriptome	137	N
F077286	Metagenome / Metatranscriptome	117	Y
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100215711	F056899	N/A	MSRNTFVKASISGDYGQDLVMKYLEDKGYEVEEAPKKLFYDWDVKATKGNRVVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRDCDSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLQMANYRVVGNSATGDDNAEGWIPPLHELLVSRYGYKATIDLTEYA
Ga0209405_100215714	F092935	N/A	MNSTAEEKSSTPIHSLILDRKVAFANLVRAYLRFNVDDALNIVVEADGSISINGSTYKFDVSDYTGSTNRYIFFNPASGRLVIEGNGKSKIYKIEVDLLDEDNK
Ga0209405_100215716	F016811	N/A	MQSDEGQMIYDVGVRLAWKKKRGNGYVNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKSVYDFYIIEEFYRKEISNSFSHKEEDYSKEFGE
Ga0209405_100215724	F050369	N/A	MKITEKDLRNWFPRDMRFLHFCAKYYGYSFHNDEVVERANHLAVLNVMRLVNRDEEFEDEAHMTGIVMSSFRYAILNSYSNSLSANEKNLEVRNDSELTYGVGDEEYSKYQASAVADTKEIDNLVDFVTEYAETNLPYLQRRALVECVIGESTMKELATDTDTSVRKVHLAKQKAIRRVKKLIGALNENEKKYGKEETNGKYISPSRSKLQIAIQLEPIRRDETRERDYSKAMSFVNTPPKV
Ga0209405_100215725	F035552	N/A	MSIKDDLLISADLDNLYWVLGQLAEKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKVLSQVMNEKMDEDVNNQF
Ga0209405_100215726	F077286	GAG	MIKYKYTVEWEGDVANYKQDFESLEEARMAMLFHRNRNAVIHVIKIDEY
Ga0209405_100215727	F031255	N/A	MIKYFNEVVSELQSKGTIFGAEYRKKNGEVTKINGRFGVAKFVKGTGTSSPNVLTVWDNNRKRYTSLIPDNIVSLNTNKTKYVKSDEFLIESYD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209405_1002157

Overview

Ecosystem & Geography

Associated Families

Sequences