Scaffold Ga0209405_1001504

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1001504
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16710
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F008577	Metagenome / Metatranscriptome	331	Y
F008695	Metagenome / Metatranscriptome	329	Y
F052198	Metagenome	143	Y
F065127	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100150425	F052198	N/A	MTKAELQDKVNELELTLNSLELNAKTVKDDLKIVNTQLEAVNKPKITKDTVNDIRNAIEEVFRQSSFNDVESYDVDFEIDYNNSLALGSIEFNDADNVAEALSDAVEYLFNIISDEDEN
Ga0209405_100150426	F065127	N/A	MSAIHNRASDKAFAKISMLNFQIRRDVVDLECGFYGGDISREQFVLVAEGNKTELKVWQYIAELIEKSNKTQ
Ga0209405_100150428	F001217	N/A	MSKTKFNGFEKYFITTALKHAIEEAEENIKELVREGKRPIYAEGYFEMVGKDLIDKVNSMTLKRDQ
Ga0209405_100150431	F008695	N/A	MDKVEHVWCEDDDRWIYLEYNKQRKIVGMNFMQGDFYEGFKKDWCKSDEGLTDFYNSMLYTFPIEKASVSTLSFINKCMWAFHAAIANREEFPQ
Ga0209405_100150435	F008577	N/A	MGNINTTKLTWEEIKDIANRLDEAVGNHFHDAMYGAIHDRPGDEEVLVSDEDIMLIKEQLKRIL