Scaffold Ga0209405_1001455

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1001455
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17028
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F030399	Metagenome / Metatranscriptome	185	N
F032988	Metagenome / Metatranscriptome	178	N
F053882	Metagenome	140	Y
F068718	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100145515	F030399	N/A	MSIKKKHTAQERFKIIESAITAMYVATSKLNRKVEELEKQIETLKPKEDE
Ga0209405_100145518	F001728	N/A	MNSIELRPTEKKDHYRLFLNGTDVTGEQERSTFRHIIEVIDNGINTGL
Ga0209405_100145523	F053882	N/A	METVKFENVSVYVAGVNGEQHLYHENNEYKNRTKEDIIKVFKLEPLHYATHLDGVEVGTFKSFNTYNWGAPFILCGVMSEDIYEGIALVNIHLGGDARGNYSEPYICEEPEALLSQNAYLFIELSNGDTYNFDCDNGEAYFNFDTLDPYYIDFEKELTQEQITELEDKNNN
Ga0209405_10014555	F068718	N/A	MLKEIIDLLNENDWLISDEDVLIAKGKYQSTTNWKEFKYNLKQRRL
Ga0209405_10014558	F032988	AGG	MENTNLVDKLNKIAEEFKVRLQRTARIDKTLATGKFANSFNTKVKDDSIEITSNVDYAGAVVDGASPARSSAGWESKKRNIESWIKAKGIRPYRRLKGGIKFAKTSTLKNSAYKSMVFAIMQSTSQRGTIKRFGYKGSNLFERVYKEIETKIGVDITEAYAEDIRTELRKIIQINNEQNI