Scaffold Ga0209405_1001171

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1001171
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19757
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016797	Metagenome	244	N
F018540	Metagenome	234	Y
F052601	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100117124	F016797	N/A	MDTLEILKAKINLQTTIIKFTSSIEELQAKHPERKDLIDSMLDSLEDISYFQSVFMQFEDQYLLECKSNLRLQMVISEQKHELEKLNILVENLKKGI
Ga0209405_100117128	F018540	N/A	MEQLRIDWWSNFNEELYCNYLIAKDEKMNTYKILYKYYKGANTDAECCQAVKYVKAEDRQEAIKLCGLWQKLIISIEKV
Ga0209405_100117129	F052601	AGCAG	MSYEIEIEYYDQDGAIFYIGETPYQVELFIETRMIEELDSYNSFNDKLSYAQVEERYYRVQKETLRCDGVNYYNEEDLCEELEEILNKWNN