NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1000648

Scaffold Ga0209405_1000648


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1000648 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27936
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (23.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003835Metagenome / Metatranscriptome466Y
F017728Metagenome / Metatranscriptome239Y
F025148Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_100064814F017728N/AMYYTTTTNDSVHYKPNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIVLKECTTYVSFSRSALNERLKRNSAIHKSI
Ga0209405_100064841F025148N/AMANVDFAKGHGTILSGSVKYARLTNESGPDGMSEKYGCDLYLDDASTKQLTDLKVLDHVRAKDPQGNFKHEEPVVKIKSINVPKGYLANRQMFDGLIGDGSEIRANVWIKKWEHKGKKGLSVWLSAYVITNLVEYKTNDSDALFEGLPDVGELTPGFENVPSSKPNVASQADAFGDDDDDSLPF
Ga0209405_10006487F003835N/AMKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGKVIGIKKYRKTAIEKRFERDDQGMQ
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