Scaffold Ga0208693_1012091

Overview

Basic Information

• Taxon OID: 3300025618
• Scaffold ID: Ga0208693_1012091
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4141
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025749	Metagenome	200	Y
F082381	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208693_10120916	F082381	GGA	MEVKKGGKRVGSGRKKADYQTKTIAFRVRVEWVDVIKSTVKAKVAELSQNSR
Ga0208693_10120917	F025749	N/A	MKNQMTIREIRRVLFETEKYTVIGADEMTNKESRDFLYAKDNQDEVMNVIDNGTHLLIWK